PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38701_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 340aa    MW: 38605.7 Da    PI: 5.326
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38701_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.1e-35131052103
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 F+ k+y++++d+ ++ li+w + +nsf+v+d+ +f++++Lp yFkhsnf+SFvRQLn+YgFkkv+ ++         weF+++
  Cotton_A_38701_BGI-A2_v1.0  13 FVAKTYQMVNDPMTDGLITWGKANNSFIVIDPLDFSQRILPVYFKHSNFSSFVRQLNTYGFKKVDPDK---------WEFANE 86 
                                 9****************************************************************999.........****** PP

                                 XXXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkkse 103
                                 +F +g+k+ll++i r+k++
  Cotton_A_38701_BGI-A2_v1.0  87 WFLRGQKHLLKNIARRKHN 105
                                 ****************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.4E-529102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-3610102IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-3310102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.1E-3013102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-171336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-175163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-176476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEADSNPKIV APFVAKTYQM VNDPMTDGLI TWGKANNSFI VIDPLDFSQR ILPVYFKHSN  60
FSSFVRQLNT YGFKKVDPDK WEFANEWFLR GQKHLLKNIA RRKHNKNPFM QLKAEDLEDE  120
EIMMEIARLK EEQKSLEEEL QGMNKRLEAT ERRPQQMMEF LYKVVEDPDL LPRMMLEKER  180
TRQLNADKKR RLTMMPSNSS SSSLAVSNNS VKSEEEEDGH PGVISSPETG FDMENNFYRS  240
SYQSSPSPDQ DSKELLGQNR LHEGQLMNYG CAAVTTQLPA VMVAPSVIGN GMAVSSSGTT  300
SVAGYGDRSG QLGYFGEMAA PWMEARPRPP YPFSLLEGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D2e-24510221129Heat shock factor protein 1
5d5v_B2e-24510221129Heat shock factor protein 1
5d5u_B2e-24510221129Heat shock factor protein 1
2ldu_A2e-24510212120Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674120.0KR067412.1 Gossypium hirsutum HSF31 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452195.10.0PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV528e-98HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A0M4GX430.0A0A0M4GX43_G
STRINGVIT_11s0016g03940.t011e-116(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-82heat shock transcription factor C1